Publications
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Kumar N.H., Kluever V., Barth E., Krautwurst S., Furlan M., Pelizzola M., Marz M., Fornasiero E.F.
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
Nucleic Acids Research, vol. 52, (no. 6), pp. 2865-2885
2024
Dermentzaki G., Furlan M., Tanaka I., Leonardi T., Rinchetti P., Passos P.M.S., Bastos A., Ayala Y.M., Hanna J.H., Przedborski S., Bonanomi D., Pelizzola M., Lotti F.
Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration
Cell Reports, vol. 43, (no. 4)
2024
Coscujuela Tarrero L., Fama V., D'Andrea G., Maestri S., de Polo A., Biffo S., Furlan M., Pelizzola M.
Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycle
Nature Communications, vol. 15, (no. 1)
2022
Leone M., Galeota E., Masseroli M., Pelizzola M.
Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions
Bioinformatics, vol. 38, (no. 5), pp. 1183-1190
2021
Lepesant J.M.J., Iampietro C., Galeota E., Auge B., Aguirrenbengoa M., Merce C., Chaubet C., Rocher V., Haenlin M., Waltzer L., Pelizzola M., Di Stefano L.
A dual role of dLsd1 in oogenesis: Regulating developmental genes and repressing transposons
Nucleic Acids Research, vol. 48, (no. 3), pp. 1206-1224
2021
Furlan M., Delgado-Tejedor A., Mulroney L., Pelizzola M., Novoa E.M., Leonardi T.
Computational methods for RNA modification detection from nanopore direct RNA sequencing data
RNA Biology, vol. 18, (no. S1), pp. 31-40
2021
Furlan M., de Pretis S., Pelizzola M.
Dynamics of transcriptional and post-transcriptional regulation
Briefings in Bioinformatics, vol. 22, (no. 4)
2021
de Pretis S., Furlan M., Pelizzola M.
Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma
Methods in molecular biology (Clifton, N.J.), vol. 2284, pp. 271-287
2021
Ianniello Z., Sorci M., Ceci Ginistrelli L., Iaiza A., Marchioni M., Tito C., Capuano E., Masciarelli S., Ottone T., Attrotto C., Rizzo M., Franceschini L., de Pretis S., Voso M.T., Pelizzola M., Fazi F., Fatica A.
New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia
Cell Death and Disease, vol. 12, (no. 10)
2021
Biasini A., Abdulkarim B., de Pretis S., Tan J.Y., Arora R., Wischnewski H., Dreos R., Pelizzola M., Ciaudo C., Marques A.C.
Translation is required for miRNA-dependent decay of endogenous transcripts
EMBO Journal, vol. 40, (no. 3)
2020
Furlan M., Tanaka I., Leonardi T., de Pretis S., Pelizzola M.
Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts
Frontiers in Genetics, vol. 11
2020
Dassi E., Baranov P.V., Pelizzola M.
Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications
Frontiers in Genetics, vol. 11
2020
Furlan M., Galeota E., Gaudio N.D., Dassi E., Caselle M., de Pretis S., Pelizzola M.
Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling
Genome Research, vol. 30, (no. 10), pp. 1492-1507
2020
de Pretis S., Furlan M., Pelizzola M.
INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species
Frontiers in Genetics, vol. 11