IIT Publications Search

Publications
2026
Rubolino C., D'Onghia M., Tordonato C., Sabo A., D'Agnelli A., Bisi S., Giambruno R., Giuliani B., Marzi M.J., Nicassio F.
Canonical and non-canonical miRNA degradation shapes state transitions and stemness in breast cancer
EMBO Journal
2026
Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Giuffre M.R., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
Corrigendum to “iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis” [Mucosal Immunol. 16(3) (2023) 326–340
Mucosal Immunology, vol. 19, (no. 1), pp. 1682-1682
2026
Zanella E., Giannattasio M., Bisi S., Nicassio F., Doksani Y.
Damage-induced i-loops generate eccDNA from repetitive elements
Molecular Cell, vol. 86, (no. 10), pp. 1856-1869.e11
2026
Chiesa A., Poli V., Croci O., Biagioni F., Fuentes P., Marenda M., Dondi A., Rodighiero S., Filipuzzi M., Sberna S., Marzi M., Nicassio F., Zuber J., Campaner S.
Functional genomic screens uncover FERMT2 as a critical regulator of YAP/TAZ-driven tumorigenicity
Cell Death and Differentiation
2026
Nolte N., Petek M., AnguloLara P., Mulroney L., Nicassio F., Marroni F., McIntyre L.
The promise of long-read RNA-seq: reducing bias in analyses of allele imbalance
NAR Genomics and Bioinformatics, vol. 8, (no. 3)
DOI 10.1093/nargab/lqag071 Article Journal
2025
Zampini M., Riva E., Lanino L., Sauta E., Dos Reis R.A., Ejarque R.M.A., Maggioni G., Termanini A., Merlotti A., Campagna A., Dall'Olio L., Kulasekararaj A., Calvi M., Di Vito C., Bonometti A., Rahal D., Croci G., Boveri E., Gianelli U., Ponzoni M., Caselli R., Albertazzi S., Todisco G., Ubezio M., Crisafulli L., Frigo A., Lugli E., Mosca E., Acha P., Ghisletti S., Nicassio F., Santoro A., Diez-Campelo M., Sole F., Ades L., Platzbecker U., Santini V., Fenaux P., Haferlach T., Sallman D., Garcia-Manero G., Mavilio D., Remondini D., Castellani G., D'Amico S., Zeidan A.M., Komrokji R., Kordasti S., Ficara F., Porta M.G.D.
Characterization and Clinical Implications of p53 Dysfunction in Patients With Myelodysplastic Syndromes
Journal of Clinical Oncology
2025
Finocchiaro C., Giuliani B., Tria G., Mimani S., Ugolini C., Marzi M.J., Nicassio F.
Dissecting the contribution of non-coding elements to Breast Cancer plasticity
RNA Society Annual Meeting 2025
Poster Conference
2025
Zdravkov M., Mulroney L., Bisi S., Rubolino C., Cscujuela Tarrero L., Marzi M.J., Leonardi T., Nicassio F.
Nanocompore 2.0 – High-throughput detection of native RNA modifications by Nanopore sequencing
EMBO Workshop The epitranscriptome
Poster Conference
2024
Mulroney L., Coscujuela-Tarrero L., Maragno P., Rubolino C., Maestri S., Furlan M., Marzi M.J., Fitzgerald T., Leonardi T., Pelizzola M., Birney E., Nicassio F.
A comprehensive survey of RNA modifications in a human transcriptome
bioRxiv
2024
Marzi M.J., Rubolino C., D'Onghia M., Tordonato C., Giuliani B., Nicassio F.
AEGEAN AWARD: Canonical and non-canonical Target-Directed MicroRNA Degradation controls cell fitness and transcriptional plasticity in breast cancer
5th International Aegean Conference on the Long and the Short of Non-Coding RNAs
Poster Conference
2024
Finocchiaro C., Giuliani B., Marzi M.J., Nicassio F.
A systematic interrogation of lncRNAs in the context of triple-negative breast cancer
ABCD 2024 RNA Biology and Systems Medicine
Poster Conference
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Yip C.W., Parr C., Takahashi H., Yasuzawa K., Valentine M., Nishiyori-Sueki H., Ugolini C., Ranzani V., Murata M., Kato M., Kang W., Yip W.H., Shibayama Y., Sim A.D., Chen Y., Shu X., Moody J.D., Umarov R., Chang J., Pandolfini L., Kawashima T., Tagami M., Nobusada T., Kouno T., Gonzalez C.A., Albanese R., Dossena R., Haberman N., Ozaki K., Kasukawa T., Lenhard B., Frith M., Bodega B., Nicassio F., Calviello L., Bienko M., Legnini I., Hilgers V., Gustincich S., Goeke J., Lecellier C.H., Shin J.W., Hon C., Carninci P.
CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription.
bioRxiv
Article Journal
2024
Finocchiaro C., Giuliani B., Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes P., Nicassio F.
Characterization of long non-coding RNAs in TNBC using multiple orthogonal approaches
IIT RNA Flagship
Poster Conference
2024
Finocchiaro C., Marzi M.J., Nadalin F., Pirra Piscazzi M., Fuentes P., Giuliani B., Nicassio F.
Characterization of long non-coding RNAs in TNBC using multiple orthogonal approaches
EpiNantes
Poster Conference
2024
Finocchiaro C., Marzi M.J., Nadalin F., Pirra Biscazzi M., Fuentes P., Giuliani B., Nicassio F.
Characterization of long non-coding RNAs in TNBC using multiple orthogonal approaches
5th International Conference on the Long and the Short of Non-Coding RNAs (06/17/2024 - 06/22/2024; Chania, Crete, Greece)
Poster Conference
2024
Zerbib J., Ippolito M.R., Eliezer Y., De Feudis G., Reuveni E., Savir Kadmon A., Martin S., Vigano S., Leor G., Berstler J., Muenzner J., Mulleder M., Campagnolo E.M., Shulman E.D., Chang T., Rubolino C., Laue K., Cohen-Sharir Y., Scorzoni S., Taglietti S., Ratti A., Stossel C., Golan T., Nicassio F., Ruppin E., Ralser M., Vazquez F., Ben-David U., Santaguida S.
Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage
Nature Communications, vol. 15, (no. 1)
2024
Ippolito M.R., Zerbib J., Eliezer Y., Reuveni E., Vigano S., De Feudis G., Shulman E.D., Kadmon A.S., Slutsky R., Chang T., Campagnolo E.M., Taglietti S., Scorzoni S., Gianotti S., Martin S., Muenzner J., Mulleder M., Rozenblum N., Rubolino C., Ben-Yishay T., Laue K., Cohen-Sharir Y., Vigorito I., Nicassio F., Ruppin E., Ralser M., Vazquez F., Santaguida S., Ben-David U.
Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells
Cancer Discovery, vol. 14, (no. 12), pp. 2532-2553